- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Class | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | xenTro2-2 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_103 | - | 49-70 | 673041-673143 | 0.968436 | Ortholog | 1/43 | 21/1248 |
2 | xenTro2-3 | mir-460 | dre-miR-460-5p | 20/22 | scaffold_10896 | + | 12-31 | 8270-8349 | 0.905084 | Ortholog | 5/12 | 3/19 |
3 | xenTro2-3 | mir-460 | oan-miR-460 | 21/21 | scaffold_10896 | + | 13-33 | 8269-8350 | 0.928304 | Ortholog | 5/12 | 3/19 |
4 | xenTro2-3 | mir-460 | gga-miR-460 | 22/22 | scaffold_10896 | + | 13-34 | 8269-8350 | 0.882472 | Ortholog | 5/12 | 3/19 |
5 | xenTro2-3 | mir-460 | dre-miR-460-3p | 22/22 | scaffold_10896 | + | 51-72 | 8268-8351 | 0.880307 | Ortholog | 5/12 | 3/19 |
6 | xenTro2-3 | mir-460 | oan-miR-460* | 20/21 | scaffold_10896 | + | 51-71 | 8268-8351 | 0.929451 | Ortholog | 5/12 | 3/19 |
7 | xenTro2-6 | mir-32 | hsa-miR-32* | 20/22 | scaffold_109 | - | 45-66 | 223224-223309 | 0.915009 | Ortholog | 16/30 | 1/31 |
8 | xenTro2-7 | mir-467 | mmu-miR-467a* | 20/22 | scaffold_1129 | + | 49-70 | 24595-24674 | 0.927336 | Ortholog | 1/13 | 2/57 |
9 | xenTro2-8 | mir-454 | hsa-miR-454* | 21/22 | scaffold_12 | + | 9-30 | 3573840-3573917 | 0.983151 | Ortholog | 8/19 | 1/21 |
10 | xenTro2-8 | mir-454 | oan-miR-454* | 21/23 | scaffold_12 | + | 10-32 | 3573839-3573918 | 0.991875 | Ortholog | 8/19 | 1/21 |
11 | xenTro2-8 | mir-454 | hsa-miR-454 | 23/23 | scaffold_12 | + | 50-72 | 3573838-3573919 | 0.999211 | Ortholog | 8/19 | 1/21 |
12 | xenTro2-8 | mir-454 | dre-miR-454b | 22/22 | scaffold_12 | + | 51-72 | 3573837-3573920 | 0.999223 | Ortholog | 8/19 | 1/21 |
13 | xenTro2-12 | mir-1306 | gga-miR-1306 | 23/23 | scaffold_12 | - | 47-69 | 2196714-2196792 | 0.999861 | Ortholog | 6/27 | 1/28 |
14 | xenTro2-12 | mir-1306 | hsa-miR-1306 | 18/18 | scaffold_12 | - | 50-67 | 2196714-2196792 | 0.999666 | Ortholog | 6/27 | 1/28 |
15 | xenTro2-12 | mir-1306 | mmu-miR-1306 | 21/21 | scaffold_12 | - | 50-70 | 2196714-2196792 | 0.999836 | Ortholog | 6/27 | 1/28 |
16 | xenTro2-15 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_124 | - | 8-30 | 147363-147441 | 0.998294 | Ortholog | 1/43 | 21/1248 |
17 | xenTro2-17 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_135 | + | 50-72 | 162783-162865 | 0.936903 | Ortholog | 3/44 | 22/2260 |
18 | xenTro2-22 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_1537 | + | 30-52 | 53132-53231 | 0.937363 | Ortholog | 3/44 | 22/2260 |
19 | xenTro2-20 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_1537 | + | 30-52 | 26519-26618 | 0.90064 | Ortholog | 3/44 | 22/2260 |
20 | xenTro2-21 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_1537 | + | 30-52 | 50549-50648 | 0.957372 | Ortholog | 3/44 | 22/2260 |
21 | xenTro2-23 | mir-1752 | gga-miR-1752 | 19/21 | scaffold_1576 | + | 26-44 | 21777-21869 | 0.893439 | Ortholog | 1/3 | 1/3 |
22 | xenTro2-24 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_161 | + | 48-70 | 1213717-1213816 | 0.998403 | Ortholog | 1/43 | 21/1248 |
23 | xenTro2-25 | mir-1422 | oan-miR-1422o | 20/22 | scaffold_165 | - | 10-30 | 515479-515558 | 0.839293 | Ortholog | 1/7 | 1/25 |
24 | xenTro2-26 | mir-466 | mmu-miR-466a-5p | 20/22 | scaffold_168 | - | 29-50 | 520379-520478 | 0.810027 | Ortholog | 3/29 | 2/178 |
25 | xenTro2-27 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_17 | + | 50-72 | 743685-743768 | 0.859198 | Ortholog | 1/43 | 21/1248 |
26 | xenTro2-28 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_189 | + | 6-28 | 1469477-1469552 | 0.824659 | Ortholog | 1/43 | 21/1248 |
27 | xenTro2-29 | mir-297 | rno-miR-297 | 21/23 | scaffold_192 | - | 15-37 | 345862-345946 | 0.997178 | Ortholog | 5/47 | 2/705 |
28 | xenTro2-30 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_20 | + | 3-24 | 2802264-2802335 | 0.951311 | Ortholog | 1/43 | 21/1248 |
29 | xenTro2-31 | mir-79 | sko-miR-79 | 21/23 | scaffold_202 | + | 50-72 | 815864-815945 | 0.870573 | Ortholog | 22/28 | 1/45 |
30 | xenTro2-32 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_209 | - | 11-33 | 1577290-1577371 | 0.939132 | Ortholog | 3/44 | 22/2260 |
31 | xenTro2-33 | mir-460 | gga-miR-460b-5p | 22/22 | scaffold_258 | + | 13-34 | 1233268-1233349 | 0.996833 | Ortholog | 5/12 | 3/19 |
32 | xenTro2-33 | mir-730 | dre-miR-730 | 22/23 | scaffold_258 | + | 14-36 | 1233267-1233350 | 0.995886 | Ortholog | 1/6 | 1/6 |
33 | xenTro2-35 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_2627 | - | 50-70 | 4818-4900 | 0.987011 | Ortholog | 1/43 | 21/1248 |
34 | xenTro2-36 | mir-765 | hsa-miR-765 | 19/21 | scaffold_2661 | - | 15-34 | 13961-14045 | 0.967153 | Ortholog | 3/15 | 1/21 |
35 | xenTro2-37 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_27 | - | 30-50 | 2480574-2480673 | 0.869414 | Ortholog | 1/43 | 21/1248 |
36 | xenTro2-38 | mir-1594 | gga-miR-1594 | 20/21 | scaffold_279 | + | 29-49 | 515960-516057 | 0.884025 | Ortholog | 1/15 | 1/24 |
37 | xenTro2-39 | mir-1812 | gga-miR-1812 | 20/22 | scaffold_281 | - | 18-39 | 680110-680193 | 0.995406 | Ortholog | 1/2 | 1/3 |
38 | xenTro2-40 | mir-1770 | gga-miR-1770 | 20/22 | scaffold_295 | + | 14-35 | 408317-408394 | 0.816751 | Ortholog | 1/12 | 1/18 |
39 | xenTro2-41 | mir-871 | mmu-miR-871 | 21/23 | scaffold_295 | + | 51-72 | 452262-452370 | 0.886096 | Ortholog | 2/3 | 1/3 |
40 | xenTro2-42 | mir-683 | mmu-miR-683 | 19/21 | scaffold_296 | - | 38-57 | 381600-381707 | 0.821341 | Ortholog | 1/3 | 1/4 |
41 | xenTro2-43 | mir-1816 | gga-miR-1816 | 18/20 | scaffold_3 | + | 3-20 | 7385599-7385666 | 0.964786 | Ortholog | 1/20 | 1/37 |
42 | xenTro2-44 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_30 | - | 28-49 | 4162317-4162415 | 0.996859 | Ortholog | 1/43 | 21/1248 |
43 | xenTro2-45 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_301 | + | 4-26 | 1315585-1315655 | 0.939708 | Ortholog | 1/43 | 21/1248 |
44 | xenTro2-47 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_303 | - | 28-49 | 1138455-1138552 | 0.919803 | Ortholog | 3/44 | 22/2260 |
45 | xenTro2-50 | mir-467 | mmu-miR-467a* | 20/22 | scaffold_31 | - | 48-69 | 1176910-1176992 | 0.904071 | Ortholog | 1/13 | 2/57 |
46 | xenTro2-51 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_312 | + | 51-71 | 666850-666932 | 0.941645 | Ortholog | 1/43 | 21/1248 |
47 | xenTro2-52 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_313 | - | 49-70 | 1283473-1283556 | 0.958532 | Ortholog | 1/43 | 21/1248 |
48 | xenTro2-53 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_32 | - | 34-55 | 3657101-3657205 | 0.857892 | Ortholog | 1/43 | 21/1248 |
49 | xenTro2-54 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_324 | - | 26-48 | 601597-601688 | 0.991664 | Ortholog | 1/43 | 21/1248 |
50 | xenTro2-55 | mir-1187 | mmu-miR-1187 | 22/23 | scaffold_336 | - | 1-23 | 1033216-1033286 | 0.883575 | Ortholog | 1/43 | 21/1248 |
51 | xenTro2-57 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_376 | - | 6-28 | 465618-465689 | 0.986056 | Ortholog | 3/44 | 22/2260 |
52 | xenTro2-58 | mir-1378 | oan-miR-1378 | 20/22 | scaffold_388 | - | 48-69 | 554074-554169 | 0.816923 | Ortholog | 1/10 | 1/10 |
53 | xenTro2-60 | mir-1344 | oan-miR-1344 | 22/24 | scaffold_413 | + | 50-72 | 824126-824202 | 0.820868 | Ortholog | 1/5 | 2/6 |
54 | xenTro2-61 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_42 | + | 50-70 | 2073317-2073398 | 0.868038 | Ortholog | 1/43 | 21/1248 |
55 | xenTro2-62 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_44 | - | 34-56 | 2629918-2630022 | 0.97918 | Ortholog | 3/44 | 22/2260 |
56 | xenTro2-63 | mir-466 | mmu-miR-466a-5p | 20/22 | scaffold_4623 | - | 26-46 | 937-1031 | 0.954863 | Ortholog | 3/29 | 2/178 |
57 | xenTro2-64 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_468 | + | 15-37 | 755694-755775 | 0.97014 | Ortholog | 3/44 | 22/2260 |
58 | xenTro2-65 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_47 | - | 23-45 | 1825631-1825724 | 0.898273 | Ortholog | 1/43 | 21/1248 |
59 | xenTro2-66 | mir-616 | hsa-miR-616 | 21/22 | scaffold_473 | - | 29-50 | 657654-657750 | 0.801958 | Ortholog | 3/4 | 1/4 |
60 | xenTro2-67 | mir-1344 | oan-miR-1344 | 22/24 | scaffold_477 | - | 48-70 | 867214-867295 | 0.988529 | Ortholog | 1/5 | 2/6 |
61 | xenTro2-68 | mir-460 | dre-miR-460-5p | 20/22 | scaffold_479 | + | 12-31 | 682642-682721 | 0.905084 | Ortholog | 5/12 | 3/19 |
62 | xenTro2-68 | mir-460 | gga-miR-460 | 22/22 | scaffold_479 | + | 13-34 | 682641-682722 | 0.882472 | Ortholog | 5/12 | 3/19 |
63 | xenTro2-68 | mir-460 | oan-miR-460 | 21/21 | scaffold_479 | + | 13-33 | 682641-682722 | 0.928304 | Ortholog | 5/12 | 3/19 |
64 | xenTro2-68 | mir-460 | dre-miR-460-3p | 22/22 | scaffold_479 | + | 51-72 | 682640-682723 | 0.880307 | Ortholog | 5/12 | 3/19 |
65 | xenTro2-68 | mir-460 | oan-miR-460* | 20/21 | scaffold_479 | + | 51-71 | 682640-682723 | 0.929451 | Ortholog | 5/12 | 3/19 |
66 | xenTro2-71 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_48 | - | 27-48 | 2905232-2905329 | 0.97635 | Ortholog | 3/44 | 22/2260 |
67 | xenTro2-72 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_490 | + | 49-71 | 747173-747249 | 0.999287 | Ortholog | 1/43 | 21/1248 |
68 | xenTro2-73 | mir-1805 | gga-miR-1805-5p | 21/22 | scaffold_5 | - | 15-35 | 5486370-5486454 | 0.99981 | Ortholog | 1/4 | 1/4 |
69 | xenTro2-73 | mir-1805 | gga-miR-1805-3p | 21/21 | scaffold_5 | - | 50-70 | 5486372-5486451 | 0.999537 | Ortholog | 1/4 | 1/4 |
70 | xenTro2-75 | mir-1815 | gga-miR-1815 | 19/21 | scaffold_501 | + | 14-33 | 549754-549832 | 0.861507 | Ortholog | 1/22 | 1/45 |
71 | xenTro2-76 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_51 | + | 50-72 | 405290-405387 | 0.988153 | Ortholog | 1/43 | 21/1248 |
72 | xenTro2-77 | mir-458 | gga-miR-458* | 20/21 | scaffold_530 | - | 17-37 | 522839-522925 | 0.982517 | Ortholog | 5/9 | 1/10 |
73 | xenTro2-77 | mir-458 | oan-miR-458* | 19/20 | scaffold_530 | - | 17-36 | 522839-522925 | 0.969571 | Ortholog | 5/9 | 1/10 |
74 | xenTro2-77 | mir-458 | dre-miR-458 | 20/22 | scaffold_530 | - | 50-69 | 522841-522922 | 0.998526 | Ortholog | 5/9 | 1/10 |
75 | xenTro2-82 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_535 | + | 40-62 | 159804-159880 | 0.884136 | Ortholog | 3/44 | 22/2260 |
76 | xenTro2-81 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_535 | + | 49-71 | 142022-142110 | 0.965689 | Ortholog | 3/44 | 22/2260 |
77 | xenTro2-80 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_535 | + | 49-71 | 125618-125711 | 0.871643 | Ortholog | 3/44 | 22/2260 |
78 | xenTro2-79 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_535 | + | 49-71 | 89832-89932 | 0.937821 | Ortholog | 3/44 | 22/2260 |
79 | xenTro2-83 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_535 | + | 50-72 | 160057-160154 | 0.893268 | Ortholog | 3/44 | 22/2260 |
80 | xenTro2-84 | mir-195 | bta-miR-195 | 20/22 | scaffold_556 | + | 11-32 | 49967-50046 | 0.991129 | Ortholog | 9/17 | 1/17 |
81 | xenTro2-86 | mir-1329 | gga-miR-1329 | 21/22 | scaffold_565 | - | 13-34 | 175019-175102 | 0.997205 | Ortholog | 2/6 | 1/6 |
82 | xenTro2-87 | mir-1346 | oan-miR-1346 | 18/18 | scaffold_645 | - | 51-68 | 29374-29462 | 0.803121 | Ortholog | 1/10 | 1/11 |
83 | xenTro2-92 | mir-1187 | mmu-miR-1187 | 21/23 | scaffold_678 | - | 48-70 | 256997-257104 | 0.838693 | Ortholog | 1/43 | 21/1248 |
84 | xenTro2-98 | mir-297 | mmu-miR-297a | 20/22 | scaffold_71 | - | 48-69 | 676345-676443 | 0.977542 | Ortholog | 5/47 | 2/705 |
85 | xenTro2-100 | mir-1959 | mmu-miR-1959 | 18/20 | scaffold_719 | - | 51-68 | 479827-479921 | 0.894049 | Ortholog | 1/10 | 1/166 |
86 | xenTro2-101 | mir-224 | hsa-miR-224* | 21/23 | scaffold_7427 | + | 50-72 | 1507-1603 | 0.978732 | Ortholog | 12/21 | 1/21 |
87 | xenTro2-102 | mir-1788 | gga-miR-1788-3p | 20/21 | scaffold_77 | - | 50-70 | 1861404-1861484 | 0.9994 | Ortholog | 1/9 | 1/9 |
88 | xenTro2-103 | mir-190 | rno-miR-190b | 21/21 | scaffold_783 | - | 14-34 | 200489-200572 | 0.973942 | Ortholog | 24/55 | 1/95 |
89 | xenTro2-103 | mir-190 | bfl-miR-190 | 22/23 | scaffold_783 | - | 15-37 | 200488-200573 | 0.970238 | Ortholog | 24/55 | 1/95 |
90 | xenTro2-103 | mir-190 | oan-miR-190b | 22/22 | scaffold_783 | - | 15-36 | 200488-200573 | 0.970422 | Ortholog | 24/55 | 1/95 |
91 | xenTro2-120 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_82 | - | 27-49 | 2515929-2516026 | 0.963747 | Ortholog | 3/44 | 22/2260 |
92 | xenTro2-117 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_82 | - | 28-50 | 2490154-2490252 | 0.934326 | Ortholog | 3/44 | 22/2260 |
93 | xenTro2-118 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_82 | - | 30-52 | 2492367-2492466 | 0.96756 | Ortholog | 3/44 | 22/2260 |
94 | xenTro2-119 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_82 | - | 30-52 | 2505365-2505464 | 0.96756 | Ortholog | 3/44 | 22/2260 |
95 | xenTro2-121 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_84 | + | 50-72 | 318437-318532 | 0.941445 | Ortholog | 3/44 | 22/2260 |
96 | xenTro2-122 | mir-1662 | gga-miR-1662 | 22/22 | scaffold_869 | + | 15-36 | 270187-270270 | 0.999734 | Ortholog | 1/3 | 1/3 |
97 | xenTro2-123 | mir-1187 | mmu-miR-1187 | 22/23 | scaffold_8692 | - | 40-62 | 12194-12303 | 0.824287 | Ortholog | 1/43 | 21/1248 |
98 | xenTro2-124 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_8764 | + | 49-71 | 1237-1329 | 0.919375 | Ortholog | 3/44 | 22/2260 |
99 | xenTro2-127 | mir-685 | bta-miR-685 | 19/21 | scaffold_91 | + | 52-70 | 1836275-1836346 | 0.981706 | Ortholog | 2/7 | 1/8 |
100 | xenTro2-128 | mir-574 | hsa-miR-574-5p | 21/23 | scaffold_9189 | - | 49-69 | 1544-1636 | 0.982564 | Ortholog | 3/44 | 22/2260 |
101 | xenTro2-129 | mir-127 | hsa-miR-127-5p | 20/22 | scaffold_94 | - | 49-70 | 745188-745278 | 0.84475 | Ortholog | 13/23 | 1/26 |
Total | 101 record(s). |